Solyc07g015870.4.1


Description : Polygalacturonase At1g48100 OS=Arabidopsis thaliana (sp|q949z1|pglr4_arath : 325.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 196.9)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0001748 (SeedPlants) Phylogenetic Tree(s): OG_06_0001748_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g015870.4.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197480 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.07 Archaeplastida
AMTR_s00103p00121270 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.03 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT1G65570 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G80170 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G01890 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G14650 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
GSVIVT01008061001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017305001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01033359001 No alias Cell wall.pectin.modification and... 0.06 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
Gb_12018 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
Gb_13356 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.08 Archaeplastida
LOC_Os01g19170.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.11 Archaeplastida
LOC_Os05g50260.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os07g10730.1 No alias Polygalacturonase OS=Actinidia deliciosa... 0.07 Archaeplastida
MA_101764g0010 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10431579g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.04 Archaeplastida
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
MA_640601g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_9231294g0010 No alias No annotation 0.02 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc02g067630.3.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc04g015530.3.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
Solyc04g025440.3.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
Solyc12g009420.3.1 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g019220.1.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Zm00001e026240_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e027720_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004334 fumarylacetoacetase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP Neighborhood
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 76 150
IPR000743 Glyco_hydro_28 184 408
No external refs found!