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  5. Solyc07g017600.3.1

Solyc07g017600.3.1


Description : pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g017600.3.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.08 Archaeplastida
AMTR_s00033p00227850 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 21... 0.02 Archaeplastida
AMTR_s00038p00046180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.07 Archaeplastida
AMTR_s00040p00233690 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
AMTR_s00071p00109420 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AMTR_s00105p00078750 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AMTR_s00129p00070300 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AT1G02810 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT1G23200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.07 Archaeplastida
AT1G53840 PME1, ATPME1 pectin methylesterase 1 0.03 Archaeplastida
AT2G26440 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT3G05610 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT3G10710 RHS12 root hair specific 12 0.04 Archaeplastida
AT3G10720 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.09 Archaeplastida
AT4G02300 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.06 Archaeplastida
AT5G27870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT5G49180 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G51500 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.08 Archaeplastida
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.03 Archaeplastida
GSVIVT01016667001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01017687001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01027652001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01028041001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
GSVIVT01028265001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01035108001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01037348001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01037349001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01038546001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
Gb_01423 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_03174 No alias pectin methylesterase 0.05 Archaeplastida
Gb_05254 No alias pectin methylesterase 0.03 Archaeplastida
Gb_06356 No alias pectin methylesterase 0.03 Archaeplastida
Gb_21388 No alias pectin methylesterase 0.04 Archaeplastida
Gb_25439 No alias pectin methylesterase 0.02 Archaeplastida
Gb_35881 No alias pectin methylesterase 0.02 Archaeplastida
Gb_36012 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os01g13320.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os01g15039.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.07 Archaeplastida
LOC_Os01g65790.1 No alias pectin methylesterase 0.08 Archaeplastida
LOC_Os02g54190.1 No alias pectin methylesterase 0.08 Archaeplastida
LOC_Os03g18860.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os04g38560.1 No alias pectin methylesterase 0.06 Archaeplastida
LOC_Os04g54850.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os05g29790.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os06g09340.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os07g47830.1 No alias pectin methylesterase 0.06 Archaeplastida
LOC_Os07g49100.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os08g34910.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os09g26360.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10332149g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10377619g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10434786g0010 No alias No annotation 0.04 Archaeplastida
MA_10435891g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_10436266g0010 No alias Pectinesterase 3 OS=Citrus sinensis... 0.02 Archaeplastida
MA_158002g0020 No alias pectin methylesterase 0.03 Archaeplastida
MA_18093g0010 No alias Pectinesterase 2.1 OS=Solanum lycopersicum... 0.03 Archaeplastida
MA_2253g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_26888g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_354248g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_648837g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_96515g0010 No alias pectin methylesterase 0.05 Archaeplastida
Mp8g00060.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp8g09330.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_25030V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c15_12280V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.04 Archaeplastida
Pp3c18_170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c18_22120V3.1 No alias pectin methylesterase PCR fragment F 0.02 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.07 Archaeplastida
Pp3c21_22110V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c26_2170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c4_22420V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Smo114014 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Smo89509 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc01g057220.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g066390.4.1 No alias Probable pectinesterase/pectinesterase inhibitor 58... 0.04 Archaeplastida
Solyc01g066420.3.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc01g099960.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc02g014300.2.1 No alias pectin methylesterase 0.06 Archaeplastida
Solyc03g078090.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc03g083870.4.1 No alias pectin methylesterase 0.06 Archaeplastida
Solyc03g123620.4.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc06g034360.2.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc07g017560.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc07g064190.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc09g075330.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc09g075350.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc11g005750.2.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc12g099410.2.1 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e004056_P002 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e009863_P001 No alias pectin methylesterase 0.06 Archaeplastida
Zm00001e019069_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e034231_P001 No alias pectin methylesterase 0.07 Archaeplastida
Zm00001e035838_P001 No alias pectin methylesterase 0.06 Archaeplastida
Zm00001e035932_P003 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e041006_P001 No alias pectin methylesterase 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0004478 methionine adenosyltransferase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:0046500 S-adenosylmethionine metabolic process IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 52 162
IPR000070 Pectinesterase_cat 228 524
No external refs found!