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  5. Solyc07g021220.3.1

Solyc07g021220.3.1


Description : DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum (sp|q2mia9|rpoc1_sollc : 169.0)


Gene families : OG0000707 (Archaeplastida) Phylogenetic Tree(s): OG0000707_tree ,
OG_05_0002942 (LandPlants) Phylogenetic Tree(s): OG_05_0002942_tree ,
OG_06_0002537 (SeedPlants) Phylogenetic Tree(s): OG_06_0002537_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g021220.3.1
Cluster HCCA: Cluster_320

Target Alias Description ECC score Gene Family Method Actions
Solyc01g056840.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc08g028910.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.33 Archaeplastida
Solyc10g011720.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 Archaeplastida
Solyc12g062567.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.02 Archaeplastida
Solyc12g062650.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.09 Archaeplastida
Zm00001e042169_P001 No alias RpoC2 core component plastid-encoded RNA polymerase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 61 99
No external refs found!