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Description : pre-mRNA-processing protein (PRP40A/B)
Gene families : OG0002768 (Archaeplastida) Phylogenetic Tree(s): OG0002768_tree ,
OG_05_0003591 (LandPlants) Phylogenetic Tree(s): OG_05_0003591_tree ,
OG_06_0004226 (SeedPlants) Phylogenetic Tree(s): OG_06_0004226_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc07g022760.4.1 | |
| Cluster | HCCA: Cluster_8 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00010p00227470 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.05 | Archaeplastida | |
| AT1G44910 | ATPRP40A, PRP40A | pre-mRNA-processing protein 40A | 0.09 | Archaeplastida | |
| AT3G19670 | ATPRP40B, PRP40B | pre-mRNA-processing protein 40B | 0.11 | Archaeplastida | |
| Cpa|evm.model.tig00000459.25 | No alias | No description available | 0.04 | Archaeplastida | |
| Cre07.g351000 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.04 | Archaeplastida | |
| GSVIVT01009302001 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.07 | Archaeplastida | |
| Gb_14217 | No alias | pre-mRNA-processing protein (PRP40A/B) | 0.03 | Archaeplastida | |
| LOC_Os01g34780.1 | No alias | pre-mRNA-processing protein (PRP40A/B) | 0.17 | Archaeplastida | |
| MA_10433850g0010 | No alias | pre-mRNA-processing protein (PRP40A/B) | 0.03 | Archaeplastida | |
| MA_8888g0010 | No alias | pre-mRNA-processing protein (PRP40A/B) | 0.05 | Archaeplastida | |
| Mp2g00410.1 | No alias | pre-mRNA-processing protein (PRP40A/B) | 0.07 | Archaeplastida | |
| Pp3c19_9950V3.1 | No alias | pre-mRNA-processing protein 40A | 0.03 | Archaeplastida | |
| Pp3c22_21780V3.1 | No alias | pre-mRNA-processing protein 40A | 0.04 | Archaeplastida | |
| Smo402621 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.09 | Archaeplastida | |
| Zm00001e020775_P002 | No alias | pre-mRNA-processing protein (PRP40A/B) | 0.11 | Archaeplastida | |
| Zm00001e020778_P001 | No alias | pre-mRNA-processing protein (PRP40A/B) | 0.16 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000350 | generation of catalytic spliceosome for second transesterification step | IEP | Neighborhood |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006338 | chromatin remodeling | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006476 | protein deacetylation | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016458 | gene silencing | IEP | Neighborhood |
| BP | GO:0016575 | histone deacetylation | IEP | Neighborhood |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Neighborhood |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
| BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
| MF | GO:0031491 | nucleosome binding | IEP | Neighborhood |
| BP | GO:0035601 | protein deacylation | IEP | Neighborhood |
| BP | GO:0043044 | ATP-dependent chromatin remodeling | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:0098732 | macromolecule deacylation | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| No external refs found! |