1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g039550.4.1

Solyc07g039550.4.1


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana (sp|q38953|deah5_arath : 1672.0)


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0004210 (LandPlants) Phylogenetic Tree(s): OG_05_0004210_tree ,
OG_06_0004353 (SeedPlants) Phylogenetic Tree(s): OG_06_0004353_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g039550.4.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
AT1G26370 No alias RNA helicase family protein 0.05 Archaeplastida
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.04 Archaeplastida
AT2G35340 MEE29 helicase domain-containing protein 0.03 Archaeplastida
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.06 Archaeplastida
AT4G01020 No alias helicase domain-containing protein / IBR... 0.03 Archaeplastida
AT5G10370 No alias helicase domain-containing protein / IBR... 0.03 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Cpa|evm.model.tig00000984.27 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.04 Archaeplastida
Cpa|evm.model.tig00022075.25 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
GSVIVT01007911001 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.05 Archaeplastida
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.12 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Gb_14269 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.07 Archaeplastida
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Gb_34264 No alias E3 ubiquitin ligase (RBR-Helicase) 0.05 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
LOC_Os02g19860.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
LOC_Os07g32430.1 No alias RNA helicase (Prp16) 0.03 Archaeplastida
LOC_Os11g20554.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Pp3c15_1470V3.1 No alias RNA helicase family protein 0.04 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.05 Archaeplastida
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.04 Archaeplastida
Pp3c23_12820V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.08 Archaeplastida
Pp3c2_27130V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Smo82212 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.03 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.05 Archaeplastida
Zm00001e010450_P001 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.12 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.06 Archaeplastida
Zm00001e038305_P001 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003029 S1_domain 237 304
IPR007502 Helicase-assoc_dom 929 1017
IPR011709 DUF1605 1075 1150
IPR001650 Helicase_C 737 867
IPR011545 DEAD/DEAH_box_helicase_dom 544 693
No external refs found!