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  5. Solyc07g040980.3.1

Solyc07g040980.3.1


Description : component ADA3 of SAGA transcription co-activator complex


Gene families : OG0002472 (Archaeplastida) Phylogenetic Tree(s): OG0002472_tree ,
OG_05_0001862 (LandPlants) Phylogenetic Tree(s): OG_05_0001862_tree ,
OG_06_0002456 (SeedPlants) Phylogenetic Tree(s): OG_06_0002456_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g040980.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00010980 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
AMTR_s00045p00222230 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
GSVIVT01001003001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
GSVIVT01015158001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.11 Archaeplastida
GSVIVT01036136001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Gb_07255 No alias component ADA3 of SAGA transcription co-activator complex 0.06 Archaeplastida
Gb_30047 No alias component ADA3 of SAGA transcription co-activator complex 0.08 Archaeplastida
LOC_Os01g73620.1 No alias component ADA3 of SAGA transcription co-activator complex 0.03 Archaeplastida
LOC_Os05g01690.1 No alias component ADA3 of SAGA transcription co-activator complex 0.02 Archaeplastida
LOC_Os05g28300.1 No alias component ADA3 of SAGA transcription co-activator complex 0.04 Archaeplastida
MA_107341g0010 No alias component ADA3 of SAGA transcription co-activator complex 0.09 Archaeplastida
Mp1g06630.1 No alias component ADA3 of SAGA transcription co-activator complex 0.1 Archaeplastida
Pp3c15_5990V3.1 No alias No annotation 0.06 Archaeplastida
Pp3c20_610V3.1 No alias No annotation 0.1 Archaeplastida
Pp3c20_790V3.1 No alias No annotation 0.12 Archaeplastida
Smo407119 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Zm00001e018678_P002 No alias component ADA3 of SAGA transcription co-activator complex 0.12 Archaeplastida
Zm00001e027665_P001 No alias component ADA3 of SAGA transcription co-activator complex 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0031023 microtubule organizing center organization IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019340 Histone_AcTrfase_su3 891 1003
No external refs found!