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  5. Solyc07g043240.4.1

Solyc07g043240.4.1


Description : pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0004417 (SeedPlants) Phylogenetic Tree(s): OG_06_0004417_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g043240.4.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00010p00267890 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00123p00050980 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT1G05310 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G11370 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT2G47280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G17060 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G18990 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01009729001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01014641001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01023786001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01028170001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
GSVIVT01033712001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Gb_01459 No alias pectin methylesterase 0.02 Archaeplastida
Gb_01460 No alias pectin methylesterase 0.04 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.03 Archaeplastida
Gb_32012 No alias pectin methylesterase 0.03 Archaeplastida
Gb_38324 No alias pectin methylesterase 0.04 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.07 Archaeplastida
LOC_Os01g19440.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os03g19610.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os07g46190.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os09g39760.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os11g45720.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os11g45730.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os12g37660.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_18312g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp3g01170.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.08 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c16_6660V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c19_8330V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c5_12660V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Solyc01g109740.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc02g075620.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e002891_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e035522_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
BP GO:0006308 DNA catabolic process IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 87 380
No external refs found!