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  5. Solyc07g045510.4.1

Solyc07g045510.4.1


Description : RNA editing factor (MEF7)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g045510.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G25360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT2G04860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G33990 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 Archaeplastida
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01000968001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.08 Archaeplastida
GSVIVT01007645001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.05 Archaeplastida
GSVIVT01008015001 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.05 Archaeplastida
GSVIVT01008715001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.12 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
GSVIVT01015521001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.08 Archaeplastida
GSVIVT01020016001 No alias Pentatricopeptide repeat-containing protein At1g26900,... 0.14 Archaeplastida
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.06 Archaeplastida
GSVIVT01024912001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
GSVIVT01025295001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.1 Archaeplastida
GSVIVT01026181001 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
GSVIVT01027196001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.04 Archaeplastida
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.08 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01036169001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_27891 No alias RNA editing factor (OTP86) 0.01 Archaeplastida
Gb_29557 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_29874 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
LOC_Os03g32620.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os05g38190.2 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.01 Archaeplastida
LOC_Os08g28830.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Pp3c14_16110V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc01g095160.3.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.04 Archaeplastida
Solyc02g094125.1.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.17 Archaeplastida
Solyc09g008300.2.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.2 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.1 Archaeplastida
Zm00001e001038_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.1 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.06 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e007597_P001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.1 Archaeplastida
Zm00001e018597_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e023504_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.05 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 698 745
IPR002885 Pentatricopeptide_repeat 158 203
IPR002885 Pentatricopeptide_repeat 596 644
IPR002885 Pentatricopeptide_repeat 468 493
IPR002885 Pentatricopeptide_repeat 262 285
IPR002885 Pentatricopeptide_repeat 395 425
IPR002885 Pentatricopeptide_repeat 570 595
IPR002885 Pentatricopeptide_repeat 367 392
IPR002885 Pentatricopeptide_repeat 290 316
IPR032867 DYW_dom 874 995
No external refs found!