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  5. Solyc07g047900.3.1

Solyc07g047900.3.1


Description : Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana (sp|q67xl4|y3544_arath : 119.0)


Gene families : OG0001381 (Archaeplastida) Phylogenetic Tree(s): OG0001381_tree ,
OG_05_0000914 (LandPlants) Phylogenetic Tree(s): OG_05_0000914_tree ,
OG_06_0005833 (SeedPlants) Phylogenetic Tree(s): OG_06_0005833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g047900.3.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01010789001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida
Gb_39033 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.04 Archaeplastida
MA_10427237g0020 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida
MA_126169g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e018569_P001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.04 Archaeplastida
Zm00001e040411_P001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 141 225
No external refs found!