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  5. Solyc07g049480.3.1

Solyc07g049480.3.1


Description : component CPSF73/Ysh1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex. nuclease CPSF73-I


Gene families : OG0001402 (Archaeplastida) Phylogenetic Tree(s): OG0001402_tree ,
OG_05_0004701 (LandPlants) Phylogenetic Tree(s): OG_05_0004701_tree ,
OG_06_0005331 (SeedPlants) Phylogenetic Tree(s): OG_06_0005331_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g049480.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00266610 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.05 Archaeplastida
Gb_26095 No alias component CPSF73-II of Cleavage and Polyadenylation... 0.06 Archaeplastida
MA_121141g0010 No alias Cleavage and polyadenylation specificity factor subunit... 0.03 Archaeplastida
MA_45580g0010 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Mp2g23780.1 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Pp3c5_16690V3.1 No alias cleavage and polyadenylation specificity factor 73 kDa subunit-II 0.04 Archaeplastida
Smo234671 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
Smo234972 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 Archaeplastida
Zm00001e006396_P001 No alias component CPSF73/Ysh1 of Cleavage and Polyadenylation... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 35 201
IPR011108 RMMBL 395 445
IPR021718 CPSF73-100_C 489 689
IPR022712 Beta_Casp 259 380
No external refs found!