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  5. Solyc07g054680.3.1

Solyc07g054680.3.1


Description : Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana (sp|q5biv3|ppr35_arath : 249.0)


Gene families : OG0011438 (Archaeplastida) Phylogenetic Tree(s): OG0011438_tree ,
OG_05_0011302 (LandPlants) Phylogenetic Tree(s): OG_05_0011302_tree ,
OG_06_0011220 (SeedPlants) Phylogenetic Tree(s): OG_06_0011220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g054680.3.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT1G11900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01020865001 No alias Pentatricopeptide repeat-containing protein At1g11900... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0031023 microtubule organizing center organization IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 223 266
IPR002885 Pentatricopeptide_repeat 345 387
IPR002885 Pentatricopeptide_repeat 287 335
No external refs found!