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  5. Solyc07g054950.2.1

Solyc07g054950.2.1


Description : cyclin (CYCD)


Gene families : OG0000252 (Archaeplastida) Phylogenetic Tree(s): OG0000252_tree ,
OG_05_0010948 (LandPlants) Phylogenetic Tree(s): OG_05_0010948_tree ,
OG_06_0010916 (SeedPlants) Phylogenetic Tree(s): OG_06_0010916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g054950.2.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00135p00066200 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
AMTR_s00190p00017930 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.08 Archaeplastida
AT3G50070 CYCD3;3 CYCLIN D3;3 0.03 Archaeplastida
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.03 Archaeplastida
AT5G67260 CYCD3;2 CYCLIN D3;2 0.04 Archaeplastida
GSVIVT01000451001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
GSVIVT01003175001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
Gb_03361 No alias cyclin (CYCD) 0.03 Archaeplastida
Gb_37608 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os07g37010.1 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os09g21450.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os12g39830.1 No alias cyclin (CYCD) 0.07 Archaeplastida
MA_114375g0010 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_93221g0010 No alias cyclin (CYCD) 0.05 Archaeplastida
Mp8g17230.1 No alias cyclin (CYCD) 0.07 Archaeplastida
Solyc12g087900.2.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e000749_P002 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e009441_P003 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e033498_P001 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e034405_P005 No alias cyclin (CYCD) 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 150 249
IPR006671 Cyclin_N 24 147
No external refs found!