Solyc07g065730.1.1

Description : Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana (sp|q9fjy7|pp449_arath : 514.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0024446 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0023311 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g065730.1.1
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00222920	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00006p00257020	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.05	Archaeplastida
AMTR_s00010p00220510	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
AMTR_s00010p00262470	No alias	Pentatricopeptide repeat-containing protein At2g02980,...	0.03	Archaeplastida
AMTR_s00012p00252800	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
AMTR_s00014p00068600	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g43980,...	0.03	Archaeplastida
AMTR_s00024p00225420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g13600...	0.06	Archaeplastida
AMTR_s00029p00062590	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
AMTR_s00029p00235510	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
AMTR_s00030p00109240	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00031p00067070	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.05	Archaeplastida
AMTR_s00032p00219990	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
AMTR_s00038p00071780	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g26540...	0.04	Archaeplastida
AMTR_s00039p00023570	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.03	Archaeplastida
AMTR_s00039p00132380	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
AMTR_s00049p00210350	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
AMTR_s00061p00127300	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
AMTR_s00065p00031420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g33680...	0.03	Archaeplastida
AMTR_s00068p00072270	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
AMTR_s00077p00031710	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
AMTR_s00081p00056740	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g08070,...	0.04	Archaeplastida
AMTR_s00122p00115170	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
AMTR_s00130p00019530	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
AMTR_s00147p00097570	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
AT1G11290	CRR22	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT1G15510	VAC1, ECB2, ATECB2	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT3G03580	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G08820	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT3G20730	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G29230	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT3G57430	OTP84	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT5G03800	emb1899, EMB175, EMB166	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
GSVIVT01000086001	No alias	Pentatricopeptide repeat-containing protein At3g14330...	0.04	Archaeplastida
GSVIVT01000420001	No alias	RNA processing.organelle machineries.RNA...	0.05	Archaeplastida
GSVIVT01003957001	No alias	Pentatricopeptide repeat-containing protein At5g65570...	0.05	Archaeplastida
GSVIVT01008173001	No alias	Pentatricopeptide repeat-containing protein At1g18485...	0.11	Archaeplastida
GSVIVT01008965001	No alias	Pentatricopeptide repeat-containing protein At4g18520,...	0.03	Archaeplastida
GSVIVT01009407001	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
GSVIVT01010031001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01010647001	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.03	Archaeplastida
GSVIVT01011479001	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.04	Archaeplastida
GSVIVT01012159001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
GSVIVT01012201001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
GSVIVT01014727001	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.06	Archaeplastida
GSVIVT01015087001	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
GSVIVT01015466001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.04	Archaeplastida
GSVIVT01017209001	No alias	RNA processing.organelle machineries.RNA...	0.07	Archaeplastida
GSVIVT01017365001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01018877001	No alias	Pentatricopeptide repeat-containing protein At5g44230...	0.04	Archaeplastida
GSVIVT01019116001	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
GSVIVT01021246001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
GSVIVT01021268001	No alias	Pentatricopeptide repeat-containing protein At4g18840...	0.12	Archaeplastida
GSVIVT01021756001	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.05	Archaeplastida
GSVIVT01022230001	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.07	Archaeplastida
GSVIVT01022894001	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.03	Archaeplastida
GSVIVT01023644001	No alias	Pentatricopeptide repeat-containing protein At4g30700...	0.04	Archaeplastida
GSVIVT01023971001	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.06	Archaeplastida
GSVIVT01025569001	No alias	Pentatricopeptide repeat-containing protein At5g66500,...	0.03	Archaeplastida
GSVIVT01026181001	No alias	Pentatricopeptide repeat-containing protein At5g08305...	0.06	Archaeplastida
GSVIVT01027077001	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
GSVIVT01027196001	No alias	Pentatricopeptide repeat-containing protein At5g08510...	0.04	Archaeplastida
GSVIVT01028022001	No alias	Pentatricopeptide repeat-containing protein At3g62890...	0.03	Archaeplastida
GSVIVT01029347001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01029382001	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
GSVIVT01030080001	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
GSVIVT01030248001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01031265001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.03	Archaeplastida
GSVIVT01032994001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01035491001	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
GSVIVT01036142001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.05	Archaeplastida
GSVIVT01036207001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.06	Archaeplastida
GSVIVT01036511001	No alias	RNA processing.organelle machineries.RNA...	0.07	Archaeplastida
GSVIVT01036943001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.05	Archaeplastida
GSVIVT01037562001	No alias	RNA processing.organelle machineries.RNA...	0.07	Archaeplastida
Gb_14867	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_21745	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.04	Archaeplastida
Gb_32017	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_33210	No alias	RNA editing factor (OTP82)	0.07	Archaeplastida
Gb_36839	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_38158	No alias	OTP70 plastidial RNA splicing factor	0.03	Archaeplastida
Gb_40766	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
LOC_Os01g08120.1	No alias	RNA editing factor (OTP81)	0.03	Archaeplastida
LOC_Os02g07050.1	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.02	Archaeplastida
LOC_Os02g40750.1	No alias	Pentatricopeptide repeat-containing protein At1g33350...	0.03	Archaeplastida
LOC_Os03g44210.2	No alias	RNA editing factor (SEL1/PDM1)	0.02	Archaeplastida
LOC_Os03g56400.1	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.02	Archaeplastida
LOC_Os03g59264.1	No alias	lectin chaperone (CRT)	0.03	Archaeplastida
LOC_Os04g35650.1	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.03	Archaeplastida
LOC_Os04g41120.1	No alias	Pentatricopeptide repeat-containing protein At4g38010...	0.02	Archaeplastida
LOC_Os05g12130.1	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
LOC_Os05g49920.1	No alias	RNA editing factor (ECB2/VAC1)	0.03	Archaeplastida
LOC_Os05g50950.1	No alias	Pentatricopeptide repeat-containing protein At4g01030,...	0.03	Archaeplastida
LOC_Os06g12510.1	No alias	Pentatricopeptide repeat-containing protein At5g15300...	0.03	Archaeplastida
LOC_Os07g09370.1	No alias	RNA editing factor (CRR28)	0.03	Archaeplastida
LOC_Os08g33700.1	No alias	Pentatricopeptide repeat-containing protein At3g47530...	0.03	Archaeplastida
LOC_Os09g24520.2	No alias	Pentatricopeptide repeat-containing protein At5g56310...	0.03	Archaeplastida
LOC_Os10g34720.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
LOC_Os11g37330.2	No alias	RNA editing factor (MEF11)	0.04	Archaeplastida
LOC_Os12g30620.1	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.02	Archaeplastida
MA_10164206g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_10248752g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_103380g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.03	Archaeplastida
MA_10429069g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_10432670g0020	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
MA_10435641g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_119635g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
MA_138676g0010	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
MA_14381g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.02	Archaeplastida
MA_16823g0010	No alias	RNA editing factor (MEF19)	0.04	Archaeplastida
MA_18165g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
MA_187514g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_24849g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_285386g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_31170g0010	No alias	RNA editing factor (MEF19)	0.03	Archaeplastida
MA_43497g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_474261g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_64083g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_65500g0010	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.06	Archaeplastida
MA_66417g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.02	Archaeplastida
MA_72886g0010	No alias	Pentatricopeptide repeat-containing protein At5g50390,...	0.03	Archaeplastida
Smo90123	No alias	Pentatricopeptide repeat-containing protein At3g22690...	0.02	Archaeplastida
Zm00001e000523_P001	No alias	Pentatricopeptide repeat-containing protein At5g15300...	0.03	Archaeplastida
Zm00001e002552_P001	No alias	RNA editing factor (SEL1/PDM1)	0.04	Archaeplastida
Zm00001e003605_P001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
Zm00001e004121_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e007042_P001	No alias	RNA editing factor (AEF1)	0.05	Archaeplastida
Zm00001e009339_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e011467_P004	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.04	Archaeplastida
Zm00001e012691_P001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
Zm00001e015727_P001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.08	Archaeplastida
Zm00001e029186_P001	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.06	Archaeplastida
Zm00001e031351_P001	No alias	RNA editing factor (ECD1)	0.08	Archaeplastida
Zm00001e032499_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e034445_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006353	DNA-templated transcription, termination	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0032977	membrane insertase activity	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	292	317
IPR002885	Pentatricopeptide_repeat	460	488
IPR002885	Pentatricopeptide_repeat	221	249
IPR002885	Pentatricopeptide_repeat	393	417
IPR002885	Pentatricopeptide_repeat	318	366
IPR002885	Pentatricopeptide_repeat	187	219
IPR032867	DYW_dom	493	616

External Links

No external refs found!

Solyc07g065730.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation