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  5. Solyc07g065950.4.1

Solyc07g065950.4.1


Description : scaffold component VCS of mRNA decapping complex


Gene families : OG0001664 (Archaeplastida) Phylogenetic Tree(s): OG0001664_tree ,
OG_05_0002039 (LandPlants) Phylogenetic Tree(s): OG_05_0002039_tree ,
OG_06_0002225 (SeedPlants) Phylogenetic Tree(s): OG_06_0002225_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g065950.4.1
Cluster HCCA: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.05 Archaeplastida
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.07 Archaeplastida
Cpa|evm.model.tig00001038.27 No alias Varicose-related protein OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01006976001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida
GSVIVT01014783001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.05 Archaeplastida
Gb_04906 No alias scaffold component VCS of mRNA decapping complex 0.03 Archaeplastida
MA_10431534g0030 No alias scaffold component VCS of mRNA decapping complex 0.04 Archaeplastida
Mp3g11710.1 No alias scaffold component VCS of mRNA decapping complex 0.05 Archaeplastida
Pp3c15_3450V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Archaeplastida
Pp3c9_4880V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Zm00001e015689_P001 No alias scaffold component VCS of mRNA decapping complex 0.08 Archaeplastida
Zm00001e023399_P003 No alias scaffold component VCS of mRNA decapping complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 219 532
No external refs found!