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  5. AMTR_s00029p00040760

AMTR_s00029p00040760 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.28

Description : Multi-process regulation.circadian clock.morning element regulation.CHE repression factor


Gene families : OG0000415 (Archaeplastida) Phylogenetic Tree(s): OG0000415_tree ,
OG_05_0000215 (LandPlants) Phylogenetic Tree(s): OG_05_0000215_tree ,
OG_06_0000299 (SeedPlants) Phylogenetic Tree(s): OG_06_0000299_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00040760
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AT2G45680 No alias TCP family transcription factor 0.03 Archaeplastida
AT3G27010 AT-TCP20, TCP20,... TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family... 0.05 Archaeplastida
GSVIVT01019876001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.01 Archaeplastida
Gb_24346 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os01g14380.1 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os01g69980.1 No alias transcription factor (TCP). TCP20 circadian clock... 0.03 Archaeplastida
LOC_Os02g42380.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os08g43160.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os09g34950.1 No alias transcription factor (TCP) 0.02 Archaeplastida
MA_16752g0010 No alias transcription factor (TCP) 0.02 Archaeplastida
Pp3c10_20400V3.1 No alias TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 0.03 Archaeplastida
Pp3c3_24660V3.1 No alias TCP family transcription factor 0.02 Archaeplastida
Solyc02g068200.1.1 No alias transcription factor (TCP). TCP20 circadian clock... 0.03 Archaeplastida
Solyc03g006800.1.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc05g007420.2.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc11g020670.1.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e003744_P001 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e016271_P001 No alias transcription factor (TCP). CHE circadian clock repression factor 0.02 Archaeplastida
Zm00001e028426_P001 No alias transcription factor (TCP). TCP20 circadian clock... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 49 144
No external refs found!