Solyc07g066410.4.1


Description : no hits & (original description: none)


Gene families : OG0005445 (Archaeplastida) Phylogenetic Tree(s): OG0005445_tree ,
OG_05_0007481 (LandPlants) Phylogenetic Tree(s): OG_05_0007481_tree ,
OG_06_0008539 (SeedPlants) Phylogenetic Tree(s): OG_06_0008539_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g066410.4.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00157140 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT2G18900 No alias Transducin/WD40 repeat-like superfamily protein 0.25 Archaeplastida
Cpa|evm.model.tig00020554.131 No alias No description available 0.08 Archaeplastida
Cre04.g215350 No alias No description available 0.22 Archaeplastida
GSVIVT01030738001 No alias No description available 0.18 Archaeplastida
LOC_Os12g41620.1 No alias no hits & (original description: none) 0.26 Archaeplastida
MA_10428181g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_40164g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_50567g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_9860436g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp7g09630.1 No alias no hits & (original description: none) 0.2 Archaeplastida
Pp3c7_4120V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.14 Archaeplastida
Smo166499 No alias No description available 0.09 Archaeplastida
Zm00001e003211_P001 No alias no hits & (original description: none) 0.19 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 41 83
No external refs found!