Solyc08g005430.3.1

Description : component GRF of GRF-GIF transcriptional complex

Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0000223 (LandPlants) Phylogenetic Tree(s): OG_05_0000223_tree ,
OG_06_0000402 (SeedPlants) Phylogenetic Tree(s): OG_06_0000402_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g005430.3.1
Cluster	HCCA: Cluster_38

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00189460	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
AMTR_s00065p00092420	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
AMTR_s00069p00196720	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	Archaeplastida
AT2G22840	GRF1, AtGRF1	growth-regulating factor 1	0.04	Archaeplastida
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.03	Archaeplastida
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.09	Archaeplastida
AT3G52910	GRF4, AtGRF4	growth-regulating factor 4	0.04	Archaeplastida
AT4G37740	GRF2, AtGRF2	growth-regulating factor 2	0.05	Archaeplastida
GSVIVT01009299001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	Archaeplastida
GSVIVT01015095001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.14	Archaeplastida
GSVIVT01016762001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.08	Archaeplastida
GSVIVT01019667001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	Archaeplastida
GSVIVT01019913001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.08	Archaeplastida
GSVIVT01024326001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	Archaeplastida
GSVIVT01027535001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
GSVIVT01033800001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.08	Archaeplastida
GSVIVT01038629001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
Gb_05477	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Gb_20400	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Gb_20443	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Gb_26136	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
LOC_Os02g45570.1	No alias	component GRF of GRF-GIF transcriptional complex	0.09	Archaeplastida
LOC_Os02g47280.1	No alias	component GRF of GRF-GIF transcriptional complex	0.08	Archaeplastida
LOC_Os02g53690.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
LOC_Os03g47140.1	No alias	component GRF of GRF-GIF transcriptional complex	0.08	Archaeplastida
LOC_Os04g48510.1	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
LOC_Os04g51190.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
LOC_Os06g02560.1	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
LOC_Os11g35030.1	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
LOC_Os12g29980.1	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
MA_111469g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
MA_137877g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
MA_18836g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
MA_88101g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Pp3c12_3720V3.1	No alias	growth-regulating factor 2	0.03	Archaeplastida
Pp3c17_1780V3.1	No alias	growth-regulating factor 2	0.03	Archaeplastida
Smo442384	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
Solyc02g092070.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e005165_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Zm00001e012104_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e015436_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Zm00001e015561_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Zm00001e023769_P003	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Zm00001e029851_P005	No alias	component GRF of GRF-GIF transcriptional complex	0.08	Archaeplastida
Zm00001e030774_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Zm00001e036224_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e036657_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Zm00001e041573_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003713	transcription coactivator activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	93	135
IPR014978	Gln-Leu-Gln_QLQ	31	65

External Links

No external refs found!

Solyc08g005430.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation