AMTR_s00029p00051540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.42

Description : Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0009426 (Archaeplastida) Phylogenetic Tree(s): OG0009426_tree ,
OG_05_0008064 (LandPlants) Phylogenetic Tree(s): OG_05_0008064_tree ,
OG_06_0003928 (SeedPlants) Phylogenetic Tree(s): OG_06_0003928_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00051540
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00090800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0016972 thiol oxidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 74 121
IPR002885 Pentatricopeptide_repeat 149 172
No external refs found!