1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g006100.4.1

Solyc08g006100.4.1


Description : No annotation


Gene families : OG0000568 (Archaeplastida) Phylogenetic Tree(s): OG0000568_tree ,
OG_05_0002353 (LandPlants) Phylogenetic Tree(s): OG_05_0002353_tree ,
OG_06_0002965 (SeedPlants) Phylogenetic Tree(s): OG_06_0002965_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g006100.4.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00255260 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00002p00255400 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT5G24790 No alias Protein of unknown function, DUF599 0.06 Archaeplastida
Gb_06269 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_09348 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_18351 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_38231 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os09g15780.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os09g32100.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g10490.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Smo105772 No alias No description available 0.03 Archaeplastida
Solyc03g079980.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc10g074950.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003584_P002 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!