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  5. Solyc08g006170.1.1

Solyc08g006170.1.1


Description : Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana (sp|q9sjn2|pp187_arath : 506.0)


Gene families : OG0010909 (Archaeplastida) Phylogenetic Tree(s): OG0010909_tree ,
OG_05_0004834 (LandPlants) Phylogenetic Tree(s): OG_05_0004834_tree ,
OG_06_0010541 (SeedPlants) Phylogenetic Tree(s): OG_06_0010541_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g006170.1.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Gb_09652 No alias Pentatricopeptide repeat-containing protein At2g36240... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 352 400
IPR002885 Pentatricopeptide_repeat 422 468
IPR002885 Pentatricopeptide_repeat 212 256
IPR002885 Pentatricopeptide_repeat 285 315
IPR002885 Pentatricopeptide_repeat 150 171
IPR002885 Pentatricopeptide_repeat 181 208
No external refs found!