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  5. Solyc08g006420.3.1

Solyc08g006420.3.1


Description : no hits & (original description: none)


Gene families : OG0002800 (Archaeplastida) Phylogenetic Tree(s): OG0002800_tree ,
OG_05_0001972 (LandPlants) Phylogenetic Tree(s): OG_05_0001972_tree ,
OG_06_0001718 (SeedPlants) Phylogenetic Tree(s): OG_06_0001718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g006420.3.1
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00254550 evm_27.TU.AmTr_v1... COP1-interactive protein 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00049p00185400 No alias Vesicle trafficking.SNARE target membrane recognition... 0.04 Archaeplastida
AT1G24460 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.1 Archaeplastida
AT4G31570 No alias CONTAINS InterPro DOMAIN/s: Prefoldin... 0.09 Archaeplastida
GSVIVT01010295001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.05 Archaeplastida
GSVIVT01033178001 No alias COP1-interactive protein 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01033179001 No alias COP1-interactive protein 1 OS=Arabidopsis thaliana 0.08 Archaeplastida
Gb_40009 No alias TNO1 vesicle trafficking tethering factor 0.04 Archaeplastida
MA_10430492g0030 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10431592g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_156987g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_167448g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_4333439g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp4g21920.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Pp3c4_12010V3.1 No alias No annotation 0.07 Archaeplastida
Zm00001e013662_P003 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e015026_P001 No alias TNO1 vesicle trafficking tethering factor 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0007030 Golgi organization IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!