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  5. AMTR_s00029p00058110

AMTR_s00029p00058110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.52

Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG0000515 (Archaeplastida) Phylogenetic Tree(s): OG0000515_tree ,
OG_05_0000563 (LandPlants) Phylogenetic Tree(s): OG_05_0000563_tree ,
OG_06_0000492 (SeedPlants) Phylogenetic Tree(s): OG_06_0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00058110
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01012667001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
LOC_Os03g31594.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 Archaeplastida
MA_103030g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida
MA_126442g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida
MA_97681g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida
Mp3g05610.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida
Pp3c16_210V3.1 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.03 Archaeplastida
Pp3c17_5410V3.1 No alias transcription factor jumonji (jmjC) domain-containing protein 0.04 Archaeplastida
Pp3c4_21970V3.1 No alias transcription factor jumonji (jmjC) domain-containing protein 0.03 Archaeplastida
Solyc02g079300.3.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida
Solyc02g082400.4.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida
Solyc03g083240.4.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 Archaeplastida
Solyc04g049140.4.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida
Solyc08g065800.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e004958_P004 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida
Zm00001e023535_P001 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.05 Archaeplastida
Zm00001e025393_P001 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
MF GO:0015093 ferrous iron transmembrane transporter activity IEP Neighborhood
BP GO:0015684 ferrous iron transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
MF GO:0072509 divalent inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR014977 WRC_dom 11 49
No external refs found!