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  5. Solyc08g006940.4.1

Solyc08g006940.4.1


Description : F-box protein SKIP19 OS=Arabidopsis thaliana (sp|q9m0u9|ski19_arath : 243.0)


Gene families : OG0000331 (Archaeplastida) Phylogenetic Tree(s): OG0000331_tree ,
OG_05_0000701 (LandPlants) Phylogenetic Tree(s): OG_05_0000701_tree ,
OG_06_0000556 (SeedPlants) Phylogenetic Tree(s): OG_06_0000556_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g006940.4.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT4G08980 FBW2 F-BOX WITH WD-40 2 0.03 Archaeplastida
GSVIVT01022415001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
LOC_Os02g21240.1 No alias Putative F-box/LRR-repeat protein 23 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os02g52130.5 No alias component FBX of SCF E3 ubiquitin ligase complex 0.02 Archaeplastida
Zm00001e027535_P001 No alias Putative F-box/LRR-repeat protein 23 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 14 58
No external refs found!