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  5. Solyc08g007760.3.1

Solyc08g007760.3.1


Description : Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica (sp|q0da50|c3h45_orysj : 137.0)


Gene families : OG0002163 (Archaeplastida) Phylogenetic Tree(s): OG0002163_tree ,
OG_05_0009668 (LandPlants) Phylogenetic Tree(s): OG_05_0009668_tree ,
OG_06_0011381 (SeedPlants) Phylogenetic Tree(s): OG_06_0011381_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g007760.3.1
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
MA_10428531g0010 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
MA_10432729g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc08g007730.2.1 No alias Zinc finger CCCH domain-containing protein 45 OS=Oryza... 0.05 Archaeplastida
Zm00001e012971_P001 No alias component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0043138 3'-5' DNA helicase activity IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR007275 YTH_domain 70 204
No external refs found!