Solyc08g008380.4.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0031856 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g008380.4.1
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00200760	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00025p00198750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AMTR_s00211p00025860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.05	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.03	Archaeplastida
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.04	Archaeplastida
GSVIVT01025159001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
Gb_39686	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os04g36054.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g43910.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g56850.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os06g47150.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os10g33940.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_10432580g0010	No alias	transcription factor (ARF)	0.05	Archaeplastida
MA_122218g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
Solyc07g042260.4.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc11g069190.2.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e012670_P001	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e013061_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e041248_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006873	cellular ion homeostasis	IEP	Neighborhood
BP	GO:0006875	cellular metal ion homeostasis	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030003	cellular cation homeostasis	IEP	Neighborhood
BP	GO:0030026	cellular manganese ion homeostasis	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0048878	chemical homeostasis	IEP	Neighborhood
BP	GO:0050801	ion homeostasis	IEP	Neighborhood
BP	GO:0055065	metal ion homeostasis	IEP	Neighborhood
BP	GO:0055071	manganese ion homeostasis	IEP	Neighborhood
BP	GO:0055076	transition metal ion homeostasis	IEP	Neighborhood
BP	GO:0055080	cation homeostasis	IEP	Neighborhood
BP	GO:0055082	cellular chemical homeostasis	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0098771	inorganic ion homeostasis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	257	336
IPR033389	AUX/IAA_dom	560	662
IPR003340	B3_DNA-bd	131	231

External Links

No external refs found!

Solyc08g008380.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation