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  5. AMTR_s00029p00078880

AMTR_s00029p00078880 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.73

Description : Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0009426 (Archaeplastida) Phylogenetic Tree(s): OG0009426_tree ,
OG_05_0008064 (LandPlants) Phylogenetic Tree(s): OG_05_0008064_tree ,
OG_06_0003928 (SeedPlants) Phylogenetic Tree(s): OG_06_0003928_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00078880
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
AMTR_s00066p00081320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g18840... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 44 73
IPR002885 Pentatricopeptide_repeat 115 142
IPR002885 Pentatricopeptide_repeat 145 173
No external refs found!