Solyc08g013690.1.1


Description : transcription factor (RAV/NGATHA)


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000986 (SeedPlants) Phylogenetic Tree(s): OG_06_0000986_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g013690.1.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.03 Archaeplastida
AT2G46870 NGA1 AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
GSVIVT01011947001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01019699001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01036447001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
LOC_Os01g04800.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
LOC_Os01g49830.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
LOC_Os05g47650.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
LOC_Os06g01860.1 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
LOC_Os11g05740.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
LOC_Os12g06080.1 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_10436315g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_18923g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_246350g0010 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
MA_3834g0010 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_865117g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_953813g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c1_16700V3.1 No alias related to ABI3/VP1 1 0.04 Archaeplastida
Pp3c2_23660V3.1 No alias AP2/B3 transcription factor family protein 0.05 Archaeplastida
Zm00001e000156_P001 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
Zm00001e007152_P001 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
Zm00001e024165_P001 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Zm00001e040214_P001 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Zm00001e041372_P001 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 53 158
No external refs found!