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  5. Solyc08g014080.4.1

Solyc08g014080.4.1


Description : RING-v-class E3 ligase


Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0000506 (LandPlants) Phylogenetic Tree(s): OG_05_0000506_tree ,
OG_06_0001067 (SeedPlants) Phylogenetic Tree(s): OG_06_0001067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g014080.4.1
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00203490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00105p00126340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT5G38070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Archaeplastida
GSVIVT01008001001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_33867 No alias Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis... 0.03 Archaeplastida
Gb_38414 No alias RING-v-class E3 ligase 0.02 Archaeplastida
LOC_Os05g28730.1 No alias RING-v-class E3 ligase 0.05 Archaeplastida
MA_10427291g0010 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Zm00001e026209_P003 No alias RING-v-class E3 ligase 0.08 Archaeplastida
Zm00001e028572_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e031477_P002 No alias RING-v-class E3 ligase 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR022143 DUF3675 135 253
IPR011016 Znf_RING-CH 84 129
No external refs found!