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  5. Solyc08g016180.3.1

Solyc08g016180.3.1


Description : component RPL18a of LSU proteome component


Gene families : OG0001762 (Archaeplastida) Phylogenetic Tree(s): OG0001762_tree ,
OG_05_0001750 (LandPlants) Phylogenetic Tree(s): OG_05_0001750_tree ,
OG_06_0001973 (SeedPlants) Phylogenetic Tree(s): OG_06_0001973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g016180.3.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00102800 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
AMTR_s00003p00234980 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
AT1G29965 No alias Ribosomal protein L18ae/LX family protein 0.04 Archaeplastida
AT2G34480 No alias Ribosomal protein L18ae/LX family protein 0.31 Archaeplastida
AT3G14600 No alias Ribosomal protein L18ae/LX family protein 0.32 Archaeplastida
Cpa|evm.model.tig00000615.59 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
Cre01.g047750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 Archaeplastida
GSVIVT01000485001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01021430001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01021433001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Gb_05341 No alias component RPL18a of LSU proteome component 0.07 Archaeplastida
LOC_Os01g47660.1 No alias component RPL18a of LSU proteome component 0.31 Archaeplastida
LOC_Os01g54870.1 No alias component RPL18a of LSU proteome component 0.19 Archaeplastida
LOC_Os05g49030.1 No alias component RPL18a of LSU proteome component 0.26 Archaeplastida
MA_12029g0010 No alias component RPL18a of LSU proteome component 0.17 Archaeplastida
Mp1g17730.1 No alias component RPL18a of LSU proteome component 0.29 Archaeplastida
Pp3c12_7770V3.1 No alias Ribosomal protein L18ae/LX family protein 0.22 Archaeplastida
Pp3c20_15150V3.1 No alias Ribosomal protein L18ae/LX family protein 0.17 Archaeplastida
Pp3c3_11250V3.1 No alias Ribosomal protein L18ae/LX family protein 0.2 Archaeplastida
Pp3c8_13880V3.1 No alias Ribosomal protein L18ae/LX family protein 0.13 Archaeplastida
Smo227198 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Zm00001e020218_P001 No alias component RPL18a of LSU proteome component 0.2 Archaeplastida
Zm00001e026540_P001 No alias component RPL18a of LSU proteome component 0.2 Archaeplastida
Zm00001e028015_P002 No alias component RPL18a of LSU proteome component 0.18 Archaeplastida
Zm00001e032436_P001 No alias component RPL18a of LSU proteome component 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR023573 Ribosomal_L18a//L18Ae/LX 7 128
No external refs found!