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  5. AMTR_s00029p00095840

AMTR_s00029p00095840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.88

Description : Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0010120 (Archaeplastida) Phylogenetic Tree(s): OG0010120_tree ,
OG_05_0010169 (LandPlants) Phylogenetic Tree(s): OG_05_0010169_tree ,
OG_06_0010176 (SeedPlants) Phylogenetic Tree(s): OG_06_0010176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00095840
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT3G19800 No alias Protein of unknown function (DUF177) 0.04 Archaeplastida
GSVIVT01010153001 No alias Large ribosomal RNA subunit accumulation protein YCED... 0.08 Archaeplastida
Gb_07148 No alias Large ribosomal RNA subunit accumulation protein YCED... 0.06 Archaeplastida
LOC_Os04g44340.1 No alias Large ribosomal RNA subunit accumulation protein YCED... 0.07 Archaeplastida
MA_10253522g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c1_30620V3.1 No alias Protein of unknown function (DUF177) 0.02 Archaeplastida
Solyc02g055440.4.1 No alias Large ribosomal RNA subunit accumulation protein YCED... 0.05 Archaeplastida
Zm00001e007542_P001 No alias Large ribosomal RNA subunit accumulation protein YCED... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0009496 plastoquinol--plastocyanin reductase activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003772 YceD 16 129
No external refs found!