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  5. Solyc08g023590.4.1

Solyc08g023590.4.1


Description : Coatomer subunit alpha-2 OS=Arabidopsis thaliana (sp|q9sjt9|copa2_arath : 84.7)


Gene families : OG0003330 (Archaeplastida) Phylogenetic Tree(s): OG0003330_tree ,
OG_05_0004653 (LandPlants) Phylogenetic Tree(s): OG_05_0004653_tree ,
OG_06_0005873 (SeedPlants) Phylogenetic Tree(s): OG_06_0005873_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g023590.4.1
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00083820 evm_27.TU.AmTr_v1... Dynein assembly factor with WDR repeat domains 1... 0.03 Archaeplastida
Cre13.g583250 No alias No description available 0.01 Archaeplastida
GSVIVT01021896001 No alias Dynein assembly factor with WDR repeat domains 1... 0.04 Archaeplastida
Pp3c1_36050V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Archaeplastida
Smo139346 No alias Dynein assembly factor with WDR repeat domains 1... 0.03 Archaeplastida
Zm00001e018453_P003 No alias Dynein assembly factor with WDR repeat domains 1... 0.05 Archaeplastida
Zm00001e039445_P001 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006732 coenzyme metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0043545 molybdopterin cofactor metabolic process IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046039 GTP metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0051189 prosthetic group metabolic process IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 195 226
IPR001680 WD40_repeat 232 268
IPR001680 WD40_repeat 57 92
IPR001680 WD40_repeat 97 136
IPR001680 WD40_repeat 15 48
No external refs found!