1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g028890.1.1

Solyc08g028890.1.1


Description : 30S ribosomal protein S2, chloroplastic OS=Solanum bulbocastanum (sp|q2mij8|rr2_solbu : 104.0)


Gene families : OG0002098 (Archaeplastida) Phylogenetic Tree(s): OG0002098_tree ,
OG_05_0001646 (LandPlants) Phylogenetic Tree(s): OG_05_0001646_tree ,
OG_06_0001309 (SeedPlants) Phylogenetic Tree(s): OG_06_0001309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g028890.1.1
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
Mp3g24030.1 No alias 30S ribosomal protein S2, chloroplastic OS=Marchantia... 0.03 Archaeplastida
Mp8g10410.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc00g500051.1.1 No alias component psRPS2 of small ribosomal subunit proteome 0.01 Archaeplastida
Solyc07g021280.1.1 No alias 30S ribosomal protein S2, chloroplastic OS=Solanum... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 1 60
No external refs found!