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  5. AMTR_s00029p00104950

AMTR_s00029p00104950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.105

Description : Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0004280 (Archaeplastida) Phylogenetic Tree(s): OG0004280_tree ,
OG_05_0002954 (LandPlants) Phylogenetic Tree(s): OG_05_0002954_tree ,
OG_06_0000415 (SeedPlants) Phylogenetic Tree(s): OG_06_0000415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00104950
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 Archaeplastida
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.03 Archaeplastida
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 253 272
IPR002885 Pentatricopeptide_repeat 106 131
IPR002885 Pentatricopeptide_repeat 207 245
IPR002885 Pentatricopeptide_repeat 274 323
IPR002885 Pentatricopeptide_repeat 135 183
No external refs found!