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  5. AMTR_s00029p00107550

AMTR_s00029p00107550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.110

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF15 component


Gene families : OG0006677 (Archaeplastida) Phylogenetic Tree(s): OG0006677_tree ,
OG_05_0007121 (LandPlants) Phylogenetic Tree(s): OG_05_0007121_tree ,
OG_06_0007805 (SeedPlants) Phylogenetic Tree(s): OG_06_0007805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00107550
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.52 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
GSVIVT01010206001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Gb_28670 No alias component TAF15 of TFIId basal transcription regulation complex 0.03 Archaeplastida
LOC_Os07g19560.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.04 Archaeplastida
LOC_Os09g12800.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.05 Archaeplastida
MA_10434282g0010 No alias component TAF15 of TFIId basal transcription regulation complex 0.02 Archaeplastida
Mp8g16600.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.04 Archaeplastida
Pp3c17_960V3.1 No alias TBP-associated factor 15 0.03 Archaeplastida
Smo97426 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Solyc11g040050.3.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.04 Archaeplastida
Zm00001e010307_P004 No alias component TAF15 of TFIId basal transcription regulation complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 92
IPR001876 Znf_RanBP2 160 189
IPR001876 Znf_RanBP2 229 255
No external refs found!