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  5. Solyc08g061000.4.1

Solyc08g061000.4.1


Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG0002910 (Archaeplastida) Phylogenetic Tree(s): OG0002910_tree ,
OG_05_0002914 (LandPlants) Phylogenetic Tree(s): OG_05_0002914_tree ,
OG_06_0002579 (SeedPlants) Phylogenetic Tree(s): OG_06_0002579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g061000.4.1
Cluster HCCA: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.03 Archaeplastida
LOC_Os01g36890.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 Archaeplastida
Pp3c7_5890V3.1 No alias DEAD/DEAH box RNA helicase family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003852 2-isopropylmalate synthase activity IEP Neighborhood
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006551 leucine metabolic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009098 leucine biosynthetic process IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 129 294
IPR001650 Helicase_C 334 441
No external refs found!