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  5. AMTR_s00029p00122290

AMTR_s00029p00122290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.136

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC1/HPR1 component


Gene families : OG0005151 (Archaeplastida) Phylogenetic Tree(s): OG0005151_tree ,
OG_05_0006834 (LandPlants) Phylogenetic Tree(s): OG_05_0006834_tree ,
OG_06_0008926 (SeedPlants) Phylogenetic Tree(s): OG_06_0008926_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00122290
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001229.4 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR021861 THO_THOC1 117 536
No external refs found!