Solyc08g067210.3.1

Description : endoribonuclease (DCL3)

Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0000940 (LandPlants) Phylogenetic Tree(s): OG_05_0000940_tree ,
OG_06_0003835 (SeedPlants) Phylogenetic Tree(s): OG_06_0003835_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g067210.3.1
Cluster	HCCA: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00026p00051870	evm_27.TU.AmTr_v1...	RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator...	0.02	Archaeplastida
AMTR_s00033p00127000	evm_27.TU.AmTr_v1...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.04	Archaeplastida
AT1G01040	DCL1, CAF,...	dicer-like 1	0.03	Archaeplastida
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.07	Archaeplastida
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.07	Archaeplastida
AT5G45150	RTL3	RNAse THREE-like protein 3	0.05	Archaeplastida
GSVIVT01001045001	No alias	RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator...	0.05	Archaeplastida
GSVIVT01027460001	No alias	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Gb_34767	No alias	endoribonuclease (DCL3). endoribonuclease (DCL4)	0.02	Archaeplastida
LOC_Os01g68120.1	No alias	endoribonuclease (DCL3)	0.03	Archaeplastida
LOC_Os03g02970.1	No alias	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.04	Archaeplastida
LOC_Os04g43050.1	No alias	endoribonuclease (DCL4)	0.05	Archaeplastida
MA_10432726g0010	No alias	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.04	Archaeplastida
MA_10436554g0010	No alias	component DRB7 of DRB4-DRB7.1 siRNA biogenesis regulator complex	0.03	Archaeplastida
MA_10437243g0010	No alias	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.03	Archaeplastida
MA_10437243g0020	No alias	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Mp7g11720.1	No alias	endoribonuclease (DCL3). endoribonuclease (DCL4)	0.04	Archaeplastida
Mp7g12090.1	No alias	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.02	Archaeplastida
Pp3c2_15900V3.1	No alias	dicer-like 1	0.02	Archaeplastida
Smo444049	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	Archaeplastida
Smo74321	No alias	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	Archaeplastida
Solyc06g048960.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e012492_P003	No alias	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp....	0.03	Archaeplastida
Zm00001e018890_P004	No alias	endoribonuclease (DCL3)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	Interproscan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016791	phosphatase activity	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005034	Dicer_dimerisation_dom	348	434
IPR003100	PAZ_dom	662	798
IPR000999	RNase_III_dom	1052	1156
IPR000999	RNase_III_dom	840	974
IPR001650	Helicase_C	164	277

External Links

No external refs found!

Solyc08g067210.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation