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Description : component SF3B5 of splicing factor 3B complex
Gene families : OG0003479 (Archaeplastida) Phylogenetic Tree(s): OG0003479_tree ,
OG_05_0003834 (LandPlants) Phylogenetic Tree(s): OG_05_0003834_tree ,
OG_06_0003710 (SeedPlants) Phylogenetic Tree(s): OG_06_0003710_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc08g069080.4.1 | |
| Cluster | HCCA: Cluster_144 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G23325 | No alias | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | 0.06 | Archaeplastida | |
| AT4G14342 | No alias | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | 0.05 | Archaeplastida | |
| Cre14.g627900 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| Pp3c25_1640V3.1 | No alias | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000045 | autophagosome assembly | IEP | Neighborhood |
| MF | GO:0005337 | nucleoside transmembrane transporter activity | IEP | Neighborhood |
| CC | GO:0005739 | mitochondrion | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| BP | GO:0007033 | vacuole organization | IEP | Neighborhood |
| BP | GO:0015858 | nucleoside transport | IEP | Neighborhood |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Neighborhood |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| CC | GO:0016272 | prefoldin complex | IEP | Neighborhood |
| BP | GO:0022607 | cellular component assembly | IEP | Neighborhood |
| MF | GO:0051082 | unfolded protein binding | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| BP | GO:0051382 | kinetochore assembly | IEP | Neighborhood |
| BP | GO:0051383 | kinetochore organization | IEP | Neighborhood |
| BP | GO:0070925 | organelle assembly | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901264 | carbohydrate derivative transport | IEP | Neighborhood |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:1901642 | nucleoside transmembrane transport | IEP | Neighborhood |
| BP | GO:1905037 | autophagosome organization | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009846 | SF3b5/RDS3-10 | 15 | 92 |
| No external refs found! |