1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g074440.4.1

Solyc08g074440.4.1


Description : no hits & (original description: none)


Gene families : OG0003958 (Archaeplastida) Phylogenetic Tree(s): OG0003958_tree ,
OG_05_0003580 (LandPlants) Phylogenetic Tree(s): OG_05_0003580_tree ,
OG_06_0003760 (SeedPlants) Phylogenetic Tree(s): OG_06_0003760_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g074440.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00210460 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AT3G49601 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.12 Archaeplastida
Cpa|evm.model.tig00001265.7 No alias No description available 0.02 Archaeplastida
GSVIVT01035595001 No alias No description available 0.07 Archaeplastida
LOC_Os04g51960.1 No alias no hits & (original description: none) 0.13 Archaeplastida
MA_8781980g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp7g06120.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c13_11540V3.1 No alias No annotation 0.05 Archaeplastida
Pp3c3_10000V3.1 No alias No annotation 0.08 Archaeplastida
Zm00001e024896_P004 No alias no hits & (original description: none) 0.2 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Neighborhood
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Neighborhood
BP GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0034243 regulation of transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR013170 mRNA_splic_Cwf21_dom 59 100
No external refs found!