AMTR_s00029p00157690 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.187

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00029p00157690
Cluster	HCCA: Cluster_255

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00221770	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.06	Archaeplastida
AT1G30330	ARF6	auxin response factor 6	0.03	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.04	Archaeplastida
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.04	Archaeplastida
GSVIVT01004942001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01008639001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01008950001	No alias	Auxin response factor 17 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01021552001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01035205001	No alias	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.04	Archaeplastida
Gb_31132	No alias	transcription factor (ARF)	0.02	Archaeplastida
Gb_32864	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_33804	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_39685	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os01g48060.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os04g36054.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g57610.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os10g33940.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os12g29520.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
MA_10432580g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_122218g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
Mp1g12750.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c17_19900V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc11g069190.2.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc11g069500.2.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
Solyc12g042070.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.07	Archaeplastida
Zm00001e006640_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e014833_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e030325_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e039552_P004	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041866_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Neighborhood
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Neighborhood
BP	GO:0000910	cytokinesis	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Neighborhood
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006304	DNA modification	IEP	Neighborhood
BP	GO:0006305	DNA alkylation	IEP	Neighborhood
BP	GO:0006306	DNA methylation	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
MF	GO:0008017	microtubule binding	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008378	galactosyltransferase activity	IEP	Neighborhood
BP	GO:0008643	carbohydrate transport	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015293	symporter activity	IEP	Neighborhood
MF	GO:0015294	solute:cation symporter activity	IEP	Neighborhood
MF	GO:0015295	solute:proton symporter activity	IEP	Neighborhood
MF	GO:0015631	tubulin binding	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0044728	DNA methylation or demethylation	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003311	AUX_IAA	704	796
IPR010525	Auxin_resp	253	336
IPR003340	B3_DNA-bd	127	228

External Links

No external refs found!

AMTR_s00029p00157690 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation