Solyc08g075840.3.1


Description : component RPA1 of single-stranded-DNA binding RPA complex. component RPA1 of RPA presynaptic filament assembly factor complex


Gene families : OG0002078 (Archaeplastida) Phylogenetic Tree(s): OG0002078_tree ,
OG_05_0002370 (LandPlants) Phylogenetic Tree(s): OG_05_0002370_tree ,
OG_06_0002562 (SeedPlants) Phylogenetic Tree(s): OG_06_0002562_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g075840.3.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Smo441216 No alias Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
InterPro domains Description Start Stop
IPR031657 REPA_OB_2 380 483
IPR007199 Rep_factor-A_N 6 107
IPR013955 Rep_factor-A_C 541 692
IPR001878 Znf_CCHC 857 872
IPR001878 Znf_CCHC 812 828
IPR004365 NA-bd_OB_tRNA 270 343
No external refs found!