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  5. Solyc08g076400.3.1

Solyc08g076400.3.1


Description : G2-like GARP transcription factor


Gene families : OG0000027 (Archaeplastida) Phylogenetic Tree(s): OG0000027_tree ,
OG_05_0000101 (LandPlants) Phylogenetic Tree(s): OG_05_0000101_tree ,
OG_06_0000453 (SeedPlants) Phylogenetic Tree(s): OG_06_0000453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g076400.3.1
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00040830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00119p00095480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AT1G69580 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
GSVIVT01009589001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01015900001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01024687001 No alias Putative Myb family transcription factor At1g14600... 0.03 Archaeplastida
Gb_01374 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Gb_17966 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Gb_38388 No alias PHR1 transcription factor involved in proline synthesis... 0.05 Archaeplastida
LOC_Os02g07770.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
LOC_Os02g46940.1 No alias G2-like GARP transcription factor 0.12 Archaeplastida
LOC_Os10g39550.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_10432937g0010 No alias G2-like GARP transcription factor 0.02 Archaeplastida
MA_181986g0010 No alias G2-like GARP transcription factor 0.02 Archaeplastida
MA_218023g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c20_7050V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c3_34900V3.1 No alias myb-like HTH transcriptional regulator family protein 0.02 Archaeplastida
Pp3c8_16910V3.1 No alias Homeodomain-like superfamily protein 0.01 Archaeplastida
Smo149357 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Solyc03g006150.2.1 No alias Putative Myb family transcription factor At1g14600... 0.02 Archaeplastida
Solyc04g008480.2.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e003093_P001 No alias G2-like GARP transcription factor 0.08 Archaeplastida
Zm00001e005797_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e009294_P001 No alias Putative Myb family transcription factor At1g14600... 0.04 Archaeplastida
Zm00001e013199_P003 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e015514_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!