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  5. Solyc08g076540.3.1

Solyc08g076540.3.1


Description : SYP2-group Qa-type SNARE component


Gene families : OG0001376 (Archaeplastida) Phylogenetic Tree(s): OG0001376_tree ,
OG_05_0001071 (LandPlants) Phylogenetic Tree(s): OG_05_0001071_tree ,
OG_06_0001041 (SeedPlants) Phylogenetic Tree(s): OG_06_0001041_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g076540.3.1
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00084940 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
Pp3c6_25680V3.1 No alias Syntaxin/t-SNARE family protein 0.03 Archaeplastida
Zm00001e017251_P001 No alias SYP2-group Qa-type SNARE component 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 217 268
IPR006011 Syntaxin_N 30 129
No external refs found!