Solyc08g076720.4.1

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000448 (LandPlants) Phylogenetic Tree(s): OG_05_0000448_tree ,
OG_06_0009042 (SeedPlants) Phylogenetic Tree(s): OG_06_0009042_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g076720.4.1
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00254310	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00018p00193700	evm_27.TU.AmTr_v1...	ABC transporter B family member 14 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00045p00108620	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00045p00109940	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00048p00046670	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00055p00102180	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.09	Archaeplastida
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AT1G02530	PGP12	P-glycoprotein 12	0.03	Archaeplastida
AT1G27940	PGP13	P-glycoprotein 13	0.06	Archaeplastida
AT1G28010	ABCB14, ATABCB14, PGP14	P-glycoprotein 14	0.03	Archaeplastida
AT3G28345	No alias	ABC transporter family protein	0.03	Archaeplastida
AT3G28415	No alias	ABC transporter family protein	0.03	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.04	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.03	Archaeplastida
AT4G18050	PGP9	P-glycoprotein 9	0.02	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.04	Archaeplastida
AT5G46540	PGP7	P-glycoprotein 7	0.03	Archaeplastida
GSVIVT01009946001	No alias	Solute transport.primary active transport.ABC...	0.09	Archaeplastida
GSVIVT01013125001	No alias	Solute transport.primary active transport.ABC...	0.05	Archaeplastida
GSVIVT01028256001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
GSVIVT01038687001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Gb_02468	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_08707	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_13906	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Gb_13908	No alias	ABC transporter B family member 10 OS=Arabidopsis...	0.04	Archaeplastida
Gb_27347	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os01g50080.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os01g50160.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os02g46680.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
MA_111099g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_126766g0010	No alias	subfamily ABCB transporter	0.06	Archaeplastida
MA_636449g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_6870g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Mp2g11920.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Mp3g11830.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	Archaeplastida
Mp7g04390.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Pp3c1_34680V3.1	No alias	P-glycoprotein 10	0.03	Archaeplastida
Pp3c21_18190V3.1	No alias	ATP binding cassette subfamily B19	0.03	Archaeplastida
Smo230688	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Solyc06g009290.4.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Solyc11g067300.2.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Solyc11g067310.3.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.12	Archaeplastida
Zm00001e025063_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e041008_P003	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016289	CoA hydrolase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016790	thiolester hydrolase activity	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	398	546
IPR003439	ABC_transporter-like	1033	1181
IPR011527	ABC1_TM_dom	56	327
IPR011527	ABC1_TM_dom	696	967

External Links

No external refs found!

Solyc08g076720.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation