Solyc08g077140.1.1


Description : Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana (sp|q9ls25|pp420_arath : 389.0)


Gene families : OG0004267 (Archaeplastida) Phylogenetic Tree(s): OG0004267_tree ,
OG_05_0002950 (LandPlants) Phylogenetic Tree(s): OG_05_0002950_tree ,
OG_06_0003235 (SeedPlants) Phylogenetic Tree(s): OG_06_0003235_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g077140.1.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00067630 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida
AMTR_s00149p00067730 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT4G16390 SVR7 pentatricopeptide (PPR) repeat-containing protein 0.11 Archaeplastida
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.08 Archaeplastida
GSVIVT01003493001 No alias Pentatricopeptide repeat-containing protein At4g16390,... 0.09 Archaeplastida
GSVIVT01003496001 No alias Pentatricopeptide repeat-containing protein At4g16390,... 0.03 Archaeplastida
Gb_17291 No alias Pentatricopeptide repeat-containing protein At4g16390,... 0.05 Archaeplastida
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida
LOC_Os03g11670.1 No alias Pentatricopeptide repeat-containing protein ATP4... 0.03 Archaeplastida
Mp1g08510.1 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida
Pp3c15_12010V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Archaeplastida
Pp3c9_6880V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.06 Archaeplastida
Smo10825 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.02 Archaeplastida
Smo442013 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 Archaeplastida
Zm00001e000850_P001 No alias Pentatricopeptide repeat-containing protein ATP4,... 0.03 Archaeplastida
Zm00001e006409_P001 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 17 63
No external refs found!