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  5. Solyc08g077310.3.1

Solyc08g077310.3.1


Description : SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana (sp|f4jcu0|sua_arath : 686.0)


Gene families : OG0004416 (Archaeplastida) Phylogenetic Tree(s): OG0004416_tree ,
OG_05_0004027 (LandPlants) Phylogenetic Tree(s): OG_05_0004027_tree ,
OG_06_0006584 (SeedPlants) Phylogenetic Tree(s): OG_06_0006584_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g077310.3.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00089100 evm_27.TU.AmTr_v1... SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT3G54230 SUA suppressor of abi3-5 0.07 Archaeplastida
GSVIVT01013204001 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.13 Archaeplastida
Gb_12277 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_28214 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os02g07070.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.09 Archaeplastida
MA_10091679g0010 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_188532g0010 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Mp1g04870.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Pp3c10_21700V3.1 No alias suppressor of abi3-5 0.07 Archaeplastida
Smo402018 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo407112 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Zm00001e028204_P003 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e033409_P006 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019902 phosphatase binding IEP Neighborhood
MF GO:0019903 protein phosphatase binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 246 306
IPR000504 RRM_dom 407 473
IPR000467 G_patch_dom 934 975
No external refs found!