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  5. Solyc08g077320.3.1

Solyc08g077320.3.1


Description : Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana (sp|q9ls72|pp261_arath : 406.0)


Gene families : OG0014167 (Archaeplastida) Phylogenetic Tree(s): OG0014167_tree ,
OG_05_0011427 (LandPlants) Phylogenetic Tree(s): OG_05_0011427_tree ,
OG_06_0011525 (SeedPlants) Phylogenetic Tree(s): OG_06_0011525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g077320.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013207001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.09 Archaeplastida
LOC_Os09g24240.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Zm00001e033799_P001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 421 468
IPR002885 Pentatricopeptide_repeat 496 521
IPR002885 Pentatricopeptide_repeat 228 257
IPR002885 Pentatricopeptide_repeat 290 320
IPR002885 Pentatricopeptide_repeat 321 347
IPR002885 Pentatricopeptide_repeat 259 285
No external refs found!