Solyc08g077420.3.1

Description : UPF1 Nonsense-Mediated mRNA Decay effector protein

Gene families : OG0001972 (Archaeplastida) Phylogenetic Tree(s): OG0001972_tree ,
OG_05_0003008 (LandPlants) Phylogenetic Tree(s): OG_05_0003008_tree ,
OG_06_0003782 (SeedPlants) Phylogenetic Tree(s): OG_06_0003782_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g077420.3.1
Cluster	HCCA: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00142490	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.Nonsense-Mediated mRNA Decay...	0.05	Archaeplastida
AT5G47010	UPF1, ATUPF1, LBA1	RNA helicase, putative	0.14	Archaeplastida
Cre02.g092500	No alias	RNA processing.RNA decay.Nonsense-Mediated mRNA Decay...	0.05	Archaeplastida
Cre03.g150350	No alias	Regulator of nonsense transcripts 1 homolog...	0.02	Archaeplastida
Cre09.g396139	No alias	Regulator of nonsense transcripts 1 homolog...	0.02	Archaeplastida
GSVIVT01013247001	No alias	RNA processing.RNA decay.Nonsense-Mediated mRNA Decay...	0.14	Archaeplastida
Gb_10556	No alias	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	Archaeplastida
Gb_22830	No alias	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.08	Archaeplastida
LOC_Os07g31340.1	No alias	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.1	Archaeplastida
MA_10002030g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10326503g0010	No alias	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.05	Archaeplastida
MA_10426702g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_10426702g0020	No alias	Regulator of nonsense transcripts 1 homolog...	0.03	Archaeplastida
MA_10436671g0010	No alias	Regulator of nonsense transcripts 1 homolog...	0.08	Archaeplastida
MA_369530g0010	No alias	Regulator of nonsense transcripts 1 homolog...	0.02	Archaeplastida
Mp1g01200.1	No alias	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.1	Archaeplastida
Pp3c20_16510V3.1	No alias	RNA helicase, putative	0.03	Archaeplastida
Pp3c23_9370V3.1	No alias	RNA helicase, putative	0.05	Archaeplastida
Zm00001e010427_P002	No alias	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.08	Archaeplastida
Zm00001e035036_P001	No alias	no hits & (original description: none)	0.12	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEA	Interproscan
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
BP	GO:0043631	RNA polyadenylation	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
MF	GO:0070566	adenylyltransferase activity	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006935	Helicase/UvrB_N	491	566
IPR018999	RNA-helicase_UPF1_UPF2-interct	137	290

External Links

No external refs found!

Solyc08g077420.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation