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  5. Solyc08g078280.1.1

Solyc08g078280.1.1


Description : Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana (sp|q9lvs3|pp422_arath : 278.0)


Gene families : OG0010512 (Archaeplastida) Phylogenetic Tree(s): OG0010512_tree ,
OG_05_0010504 (LandPlants) Phylogenetic Tree(s): OG_05_0010504_tree ,
OG_06_0009985 (SeedPlants) Phylogenetic Tree(s): OG_06_0009985_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g078280.1.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00128960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g47360... 0.03 Archaeplastida
AT5G47360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
LOC_Os03g12430.1 No alias Pentatricopeptide repeat-containing protein At5g47360... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 165 196
IPR002885 Pentatricopeptide_repeat 307 336
IPR002885 Pentatricopeptide_repeat 348 393
IPR002885 Pentatricopeptide_repeat 203 252
No external refs found!