Solyc08g080220.3.1


Description : subunit 1 of Pol IV RNA polymerase


Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0006334 (LandPlants) Phylogenetic Tree(s): OG_05_0006334_tree ,
OG_06_0007963 (SeedPlants) Phylogenetic Tree(s): OG_06_0007963_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g080220.3.1

Target Alias Description ECC score Gene Family Method Actions
Gb_11654 No alias subunit 1 of Pol IV RNA polymerase 0.03 Archaeplastida
Gb_33197 No alias subunit 1 of Pol II RNA polymerase 0.02 Archaeplastida
LOC_Os04g48370.1 No alias subunit 1 of Pol IV RNA polymerase 0.08 Archaeplastida
MA_10436091g0010 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis... 0.02 Archaeplastida
MA_8720349g0010 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida
Pp3c17_3180V3.1 No alias nuclear RNA polymerase D1A 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 164 320
IPR007066 RNA_pol_Rpb1_3 326 474
IPR007083 RNA_pol_Rpb1_4 538 601
No external refs found!